MRIQC: individual T1w report

Summary

  • BIDS filename: sub-2008_ses-1_T1w.
  • Date and time: 2024-07-08, 16:08.
  • MRIQC version: 0.16.1.
  • Workflow details:
    • Detected a zero-filled frame, has the original image been rotated?

Visual reports

Zoomed-in (brain mask)
Background noise

Other

cjv0.43043290214678764
cnr2.933748788134795
efc0.6232229714084666
fber482.34584412782914
fwhmavg4.064003333333333
fwhmx4.20383
fwhmy4.19262
fwhmz3.79556
icvscsf0.1989556055919157
icvsgm0.3975913758432385
icvswm0.4034530185648458
inumed1.4782243967056274
inurange0.6581900715827937
qi10.0
qi20.0056511910239969805
rpvecsf30.566764381572224
rpvegm15.805619828403158
rpvewm19.052137943643302
sizex192
sizey256
sizez256
snrcsf3.652103510137813
snrgm10.665163317865062
snrtotal12.16824698995525
snrwm22.187474141862875
snrdcsf22.516688982695758
snrdgm44.67710998075178
snrdtotal42.19888410310278
snrdwm59.402853345860784
spacingx1.0
spacingy1.0
spacingz1.0
summarybgk2.4164185443501767
summarybgmad11.028702346607336
summarybgmean28.68480972155418
summarybgmedian26.50053508579731
summarybgn2433612.0
summarybgp0514.923985548317432
summarybgp9550.3045244961977
summarybgstdv11.657955635200372
summarycsfk2.2023220270606734
summarycsfmad97.12151003981086
summarycsfmean395.7240963180393
summarycsfmedian379.0506360605359
summarycsfn24040.0
summarycsfp05251.5691146478057
summarycsfp95583.6649868313223
summarycsfstdv103.78751620201889
summarygmk0.2569470371762934
summarygmmad65.89649652097883
summarygmmean755.7047596668596
summarygmmedian752.1037826016545
summarygmn14629.0
summarygmp05646.287610925734
summarygmp95880.8033987849949
summarygmstdv70.51725827614786
summarywmk0.7757855576045971
summarywmmad40.806198682447146
summarywmmean998.2581981366372
summarywmmedian1000.0000160709023
summarywmn238630.0
summarywmp05920.0334891453385
summarywmp951068.575962126255
summarywmstdv45.070381350346146
tpmoverlapcsf0.16546300053596497
tpmoverlapgm0.43050169944763184
tpmoverlapwm0.5116979479789734
wm2max0.6301526382093575
AcquisitionMatrixPE256
AcquisitionNumber1
AcquisitionTime14:13:19.767500
BaseResolution256
CoilCombinationMethodAdaptive Combine
CoilStringT:HEA;HEP
ConversionSoftwaredcm2niix
ConversionSoftwareVersionv1.0.20220720
Dcm2bidsVersion2.1.7
DeviceSerialNumber35451
DwellTime3e-06
EchoTime0.00164
FlipAngle7
ImageOrientationPatientDICOM[-0.111469, 0.993768, 3.87138e-08, 0.0468129, 0.00525095, -0.99889]
ImageOrientationTextSag>Cor(-6.4)>Tra(-2.7)
ImageType['ORIGINAL', 'PRIMARY', 'OTHER', 'ND', 'NORM', 'MEAN']
ImagingFrequency123.223
InPlanePhaseEncodingDirectionDICOMROW
InstitutionAddressExposition Drive 1777,Boulder-D4A842-,Denver,US,80301
InstitutionNameIntermountain Neuroimaging Consortium
InstitutionalDepartmentNameDepartment
InversionTime1.2
MRAcquisitionType3D
MagneticFieldStrength3
ManufacturerSiemens
ManufacturersModelNameTrioTim
MatrixCoilModeGRAPPA
ModalityMR
NonlinearGradientCorrectionTrue
NumberOfAverages5
ParallelReductionFactorInPlane2
PartialFourier1
PatientPositionHFS
PercentPhaseFOV100
PercentSampling100
PhaseEncodingSteps255
PhaseResolution1
PixelBandwidth651
ProcedureStepDescriptionVMITTAL^frontalsub_200007
ProtocolNamemprage_5e
PulseSequenceDetails%CustomerSeq%\tfl_mgh_multiecho
ReceiveCoilNameHeadMatrix
ReconMatrixPE256
RefLinesPE32
RepetitionTime2.53
SAR0.0806533
ScanOptionsIR
ScanningSequenceGR\IR
SequenceNametfl3d5_ns
SequenceVariantSP\MP
SeriesDescriptionmprage_5e RMS
SeriesNumber3
ShimSetting[6773, 12571, -7172, -38, 281, -293, -1, 124]
SliceThickness1
SoftwareVersionssyngo MR B17
StationNameMRC35451
TxRefAmp347.641
md5sum3fd300cb4d42530e15dba9b3d6fbae4c
softwaremriqc
version0.16.1
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For details on the IQMs (image quality metrics) and further information on the enclosed plots, please read the documentation.